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What is the human genome?

Human Genome Project at UCSC

UCSC Genome Browser overview

David Haussler

Jim Kent

Comparative genomics

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The challenge of bioinformatics
Essay by David Haussler

Webcast: NGRI genome symposium, "From Double Helix to Human Genome—and Beyond"
April 2003

 
   
 


Cold Spring Harbor: DNA from the Beginning

DOEgenomes.org

 
 
 

The graphs below indicate the similarity between the human genome and those of the chimpanzee and the mouse as they are mapped to identical locations in the human genome. Since the chimpanzee genome is closer in evolutionary time to the human genome, the chimp chromosomes map very closely to human chromosomes. The mouse genome is more distant in evolutionary time from human, and thus its chromosomes do not map as closely as do the chimp chromosomes.

The white areas indicate areas of the human genome that either do not map well to the other genome, or are areas of centromeres and telomeres where the genome sequence is unknown. Chromosome numbering is purely arbitrary, based upon early microscopic estimates of chromosome length. The chimpanzee genome has 23 numbered chromosomes, the human genome has 22 numbered chromosomes (chimp chromosomes 2a and 2b map to human chromosome 2), the mouse genome has 19 numbered chromosomes. The X and Y sex chromosomes have unique names, as well as other unique characteristics.

Mouse genome mapped on the human genome
This image shows the 34% of the mouse genome that maps to identical sequence in the human genome. The matching locations are jumbled, indicating rearrangements of the two genomes since their last common ancestor, approximately 75 million years before present. (reference)

Image: mouse genome mapped to the human genome, showing rearrangement of the two genomes since the last common ancestor

Chimpanzee genome mapped on the human genome
This image shows the 95% of the chimpanzee genome that maps to identical sequence in the human genome. The consistency of the color indication demonstrates the close identity between the two genomes since their last common ancestor, approximately 5 million years before present. (reference) The human chromosome 2 actually aligns to two separate chimp chromsomes, now called chr2a and chr2 and represented here by the same color. These chromosomes were formerly named chr12 and chr13 but have been renamed by the Chimp Sequencing Consortium to reflect the fact that they share a common origin with human chr2.

Image: chimpanzee genome mapped to the human genome, showing a high level of alignment between the two

Data for these two figures were assembled from the Genome Browser at UC Santa Cruz by Hiram Clawson and Kate Rosenbloom. 09 June 2006

   
     
 
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